This is an observation, along with a sketch of a potential construction where (1) does not imply (2) for $\mathbb{R}^3$.
Observation. I want to point out an example of a closed set $X \subset \mathbb{R}^2$ and a continuous injective function $f: X \rightarrow X$ such that $f$ has property (1) but not (2).
To construct this example, start with the sequence of points $a_n = (n - 10^{\lfloor log_{10}{n} \rfloor}, 10^{- \lfloor log_{10}{n} \rfloor})$.
Informally: "rows" of points approaching the $x$-axis, where the size of the rows increases exponentially (9, 90, 900, etc.), and their distance to the $x$-axis decreases exponentially (1, 1/10, 1/100, etc.).
Let $X = \{ a_1, a_2, a_3, ... \} \cup \{ (0,0), (1,0), (2,0), ... \}$
Define $f$ by $f(a_n) = a_{n+1}$, and $f(x, 0) = (x + 1, 0)$.
This dynamical system breaks into two pieces: translation on non-negative lattice points on the $x$-axis, and an orbit, $\{a_n\}$, that accumulates on the origin (and subsequent lattice points) at exponentially increasing intervals. On the rows of $\{a_n\}$, points shift rightward until they reach the end of the row, in which case they "wrap around" to the first position in the next row down.
The function $f$ is continuous and injective. It does not have property (2), since if $K$ is a closed ball around the origin, it contains some of the $\{a_n\}$, whose orbit will accumulate on the origin and intersect $K$ infinitely often.
The function $f$ does have property (1). Let $K$ be a compact set, and let $M$ be the maximum $x$-coordinate of any point in $K$. Let $10^m$ be the smallest power of ten greater than $M$. Then $f^{5 \cdot 10^m} (K) \cap K = \emptyset$. To see this, note that all points in the initial rows of size less than or equal to $10^m$ will be shifted to the row of size $9 \cdot 10^{m}$ and on this row will be shifted more than $10^m$ to the right of the $x$-axis, so won't lie in $K$. Points in other rows will also shift far enough to the right so they don't hit $K$, but their rows are long enough that they won't "wrap" to come back to the $x$-axis.
Notes and solution sketch
Going back to the original problem, this example shows that a proof that (1) implies (2) will have to use some fact about $\mathbb{R}^d$, rather than just pure dynamical considerations.
It also suggests a path to construct an example where (1) holds but not (2) for a dynamical system on $\mathbb{R}^d$. A sketch of a potential construction might go something like this:
First, we can certainly extend $f$ to a homeomorphism $g$ on all of $\mathbb{R}^2$. (For the "wrapping" from one row to the next, imagine making a loop around the top; there could be a repelling fixed point somewhere on the positive $y$-axis.) Below the $x$-axis, we can just set $g$ to be a translation one unit to the right.
All the extensions I can think of for $g$ will lose property (1). To save the situation, we move to $\mathbb{R}^3$.
Let $d(x, X)$ be the distance from the point $x$ to the set $X$. For $x \in \mathbb{R}^2$ and $z \in \mathbb{R}$, define
$$\varphi(x, z) = (g(x), z - d(x, X))$$
In other words, under the action of $\varphi$ points move steadily downwards, with the exception of points lying directly above or below $X \times \{0\}$. Edit: fedja points out that a stronger downward component might be useful. (For points near $X$ one could shift by $d(x, X)^{1/2}$ for example.)
The map $\varphi$ doesn't have property (2) since it is the same as $f$ restricted to $X \times \{0\}$. On the other hand, with careful attention to the steady downward movement away from $X$, one might be able to show that for a compact $K$, for high enough $n$, iterates $\varphi_n(K)$ could only intersect $K$ very close to $X \times \{0\}$, and property (1) would hold for the same reasons as in the construction of $f$.