I assume you understand how the basic language of category theory (morphisms, functors, natural transformation) is very convenient in many areas of mathematics, and that your question is more about why category theory seems to be particularly indispensable when it comes to modern algebraic geometry. For example, sheaves are often defined in introductory books on differential geometry without referring to category theory, and even Ext and Tor can be defined and studied with a bare minimum of categorical language. At what point in algebraic geometry does category theory become more than just a convenience?
I'd nominate the notion of a Grothendieck topology as one of the simplest concepts that is indispensable to modern algebraic geometry and that one cannot reasonably define without category theory. As others have noted, from an early stage, it seemed that the Weil conjectures were begging to be proved via cohomological techniques. But conventional topology was not up to the task of defining a suitable cohomology theory, and hence Grothendieck came up with the notion of a Grothendieck topology (and related concepts).
Since then, of course, increasingly sophisticated applications of category theory have entered algebraic geometry, but I think this is still a good example of a basic concept that requires more than a superficial use of categorical language.