Since Grothendieck introduced them in the 1960s, topoi have found many applications in algebraic geometry, category theory, and logic. For instance, they appear in the development of étale and crystalline cohomology, and feature prominently in SGA4.
However, it appears (to me, at least) that they are not as widely used today in algebraic geometry (that is, not counting developments in logic, higher category theory, and derived algebraic geometry, with a concrete example being Lurie's work on spectrally ringed $\infty$-topoi)).
So, how are topoi used in algebraic geometry today?