Here is a proof of Conjecture 1.
Proof. We proceed by induction on $|V(G)|$. We may clearly assume $|V(G)| \geq 4$prove the contrapositive. Since $\mathcal{C}(H) = \mathcal{C}(H)^{{\perp}{\perp}}$, for all induced subgraphs $H$ of $G$, we may assume (by induction) Suppose that every proper induced subgraph of $G$ is not a cograph. Thus, Then $G$ is itself a cograph unlesshas an induced subgraph $G=P_4$$H$ such that $H \simeq P_4$. Let Let $V(G)=\{1,2,3,4\}$$V(H)=\{1,2,3,4\}$ and $E(G)=\{12,23,34\}$$E(H)=\{12,23,34\}$. Thus, $\mathcal{C}(G)=E(G)$$\mathcal{C}(H)=E(H)$ and so $\mathcal{C}(G)^{\perp}=\{13,24\}$$\mathcal{C}(H)^{\perp}=\{13,24\}$. It follows that $\mathcal{C}(G)^{{\perp}{\perp}}=\{12,23,34,14\} \neq \mathcal{C}(G)$, which is a contradiction$\mathcal{C}(H)^{{\perp}{\perp}}=\{12,23,34,14\} \neq \mathcal{C}(H)$.