Added November 29, 2011: What follows is wrong; the answer seems rather to be yes. (See below for details.)
For an arithmetic geometer, one should think of an automorphic form on the adelic group $G(\mathbb A_K)$ as a morphism from the motivic Galois group (over the base number field $K$) to the $L$-group of $G$. (There are subtleties and caveats, of course, but they need not concern us here; all I will say about them is that automorphic forms can give rise to "motives" with non-integral $(p,q)$ in its Hodge decomposition, which necessitates enlarging the category of motives to an unknown larger category, whose hypothetical Tannakian group is called "the Langlands group".)
But even if we destroy the property of having regular Hodge numbers, we typically still don't have an Artin motive. To get an Artin motive we have to have $h^{p,q} = 0$ unless $p = q = 0$, and to do this, we have to do even more destructive things, like map the $L$-group of $G$ into the $L$-group of $H$ via the trivial representation, or something similar. Again, this won't correspond to any kind of interesting automorphic forms, just those that correspond to (certain) sums of characters. So we can't produce interesting Galois type automorphic forms out of automorphic forms whose factors at primes above $\infty$ are discrete series.]
[Correction added Nov. 29, 2011: From the Galois/motivic point of view, we have an algebraic group (the Mumford--Tate group of some motive), with a representation (the particular motive), and the Mumford--Tate group contains a cocharacter whose eigenvalues are the Hodge numbers. Discrete series corresponds to the eigenspaces being one dimensional. We now apply some functoriality, which is essentially to say that we apply some multi-linear algebraic process to the representation. Now this can certainly produce eigenspaces for the cocharacter of multiplicity $> 1$. (E.g. the adjoint representation of $SL_3$ has a two-dimensional eigenspace.) So it seems that functoriality doesn't preserve being discrete series. It does preserve being tempered. And the remarks about not getting Artin motives still seem okay, since while the eigenspaces can become greater than $1$-dimensional, for all the eigenspaces to become trivial, we have to do something pretty destructive, like applying functoriality for the trivial representation.]