Theorem (Artin 1971 [1]): Let $X$ be a quasi-compact AF-scheme. Then for any abelian sheaf $\mathscr{F}$ on the etale site of $X$, the map $$ \check{\mathrm{H}}^{i}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{i}(X,\mathscr{F}) $$$$ \check{\mathrm{H}}{}^{i}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{i}(X,\mathscr{F}) $$ is an isomorphism for all $i$.
Theorem (Schröer 2003 [7]): Let $X$ be a Noetherian scheme and let $n$ be an integer such that $n \le a(X)$. Then for any abelian sheaf $\mathscr{F}$ on the etale site of $X$, the map $$ \check{\mathrm{H}}^{i}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{i}(X,\mathscr{F}) $$$$ \check{\mathrm{H}}{}^{i}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{i}(X,\mathscr{F}) $$ is an isomorphism for $i \le n$ and an injection for $i = n+1$.
Example: For an example of a scheme $X$ and an abelian sheaf $\mathscr{F}$ on the etale site of $X$ for which the map $$ \check{\mathrm{H}}^{2}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{2}(X,\mathscr{F}) $$$$ \check{\mathrm{H}}{}^{2}(X,\mathscr{F}) \to \mathrm{H}_{\mathrm{et}}^{2}(X,\mathscr{F}) $$ is not an isomorphism, see the answers to this question. The current answers discuss the cases (1) $\mathscr{F}$ is a constant sheaf and (2) $\mathscr{F} = \mathcal{O}_{X}$.
(Gabber) For an example of a scheme $X$ for which the map $$ \check{\mathrm{H}}^{2}(X,\mathbb{G}_{m}) \to \mathrm{H}_{\mathrm{et}}^{2}(X,\mathbb{G}_{m}) $$$$ \check{\mathrm{H}}{}^{2}(X,\mathbb{G}_{m}) \to \mathrm{H}_{\mathrm{et}}^{2}(X,\mathbb{G}_{m}) $$ is not an isomorphism, let $R$ be a normal noetherian strictly henselian local ring of dimension $\ge 2$ whose punctured spectrum $U$ has nonzero Picard group (see e.g. this and this for examples of such $R$), and let $X$ be the gluing of two copies of $\operatorname{Spec} R$ along $U$. This is a local version of the counterexample to $\operatorname{Br} = \operatorname{Br}'$ due to Edidin, Hassett, Kresch, Vistoli [9].