The following mostly answers your question, but not completely:
$\newcommand{\C}{\mathcal{C}}\epsilon_X : \C(-,F(X)) \to [\C'](-,X)$ is injective because $\epsilon_X$ is mono, and is surjective by the definition of $[\C']$ together with the universal property of $\epsilon_X$ in the adjunction.
If $\C'' \subseteq \C' \subseteq \C$ are successively right rejective, with adjoints $F'$, $F$ to their inclusions $i'$, $i$, then the inclusion $i'' : \C'' \subseteq \C$ has a right adjoint given by $F' \cdot F$, as Julian Kuelshammer says in comments.
However, it is not clear to me why in (2.) the counit $\epsilon''$ will be pointwise mono. We have $\epsilon''_X = \epsilon_X \cdot \epsilon'_{FX} : F'FX \to X$, and $\epsilon_X$ is mono, but we only know that $\epsilon'_{FX}$ is mono in $\C'$, not necessarily in $\C$. (Subcategory inclusions don’t necessarily preserve monos.)
Possible conditions that would give this are:
any functor that preserves finite limits (or even just pullbacks) preserves monos
if the inclusion has a left adjoint as well as a right adjoint, then the inclusion must preserve all limits