The first natural thing that come to mind would be to consider the variation of the difference of the measure, i.e. assuming that the limit $$ \lim_{R\to\infty}|\nu-\mu|(B_R) $$ exists.
Considering the desired situation as stated in a comment (i.e. Hausdorff measures with disjoint but close supports), let's rephrase this a bit: The total variation of a measure is indeed a metric on the space of measures, so the above can also be written as $$ \lim_{R\to\infty}d_{TV}(\nu\llcorner B_R,\mu\llcorner B_R) $$ i.e. as the total variation distance of the measures restricted to the balls. As this metric may be too strong for the applications in mind one could replace the metric $d_{TV}$ by weaker metrics and use the condition that $$ \lim_{R\to\infty}d(\nu\llcorner B_R,\mu\llcorner B_R) $$ exists. There are several weaker metrics for measures available, e.g. the ones mentioned in the answers to this questionthis question. As an example, one might consider the Kantorovich-Rubinstein metric which is $$ d_{KR}(\mu,\nu) = \sup\{\int f d(\mu-\nu)\mid \mathrm{Lip}(f)\leq 1,\ \|f\|_\infty\leq 1\} $$ i.e. in this particular case $$ d_{KR}(\mu\llcorner B_r,\nu\llcorner B_R) = \sup\{\int_{B_R} f d(\mu-\nu)\mid \mathrm{Lip}(f)\leq 1,\ \|f\|_\infty\leq 1\}. $$ You may play around with the bounds on the Lipschitz constant and the function $f$ as the former is relevant for the measurement of "geometric nearness" while the latter is relevant for the measurement of the mass mismatch.