I'm not sure what you mean by "every projective scheme should have a quantum cohomology structure". In the talk abstract that you link to, it does not say "projective scheme" but "smooth projective variety". I don't know whether the theory generalizes to non-smooth things or to non-variety things that are not varieties.
Quantum cohomology is a deformation of ordinary cohomology (or Chow ring if you like) of a smooth projective variety (or compact symplectic manifold). This structure comes from (genus 0) Gromov-Witten invariants. GW invariants are constructed using the ordinary cohomology of your variety/manifold and the ordinary cohomology of moduli spaces of stable maps and stable curves. There is also a K-theoretic version of quantum cohomology, appropriately named quantum K-theory. This structure comes from a K-theoretic version of GW invariants. In the algebraic context, there is something called a motive, which is supposed to be in some sense "the universal cohomology theory"I mostly work over -- here cohomology theory does$\mathbb{C}$ so I don't know too much about what I'm about to say, but if you're not mean Eilenberg-Steenrodworking over $\mathbb{C}$, then ordinary cohomology theorydoesn't make sense, but ratherinstead you can still work with things like (I think) Weil$\ell$-adic cohomology theoryor crystalline cohomology. I don't know anything about motives, butThis is what "motives" refers to. I guess Manin is saying that just as you can do cohomological (and Chow) and KGromov-theoretic versions of GWWitten invariants and thus quantum cohomology and quantum K-theory, you can also do the same or analogous thingthings for motives. I suppose the resulting things would be called "motivic Gromov-Witten invariants" and "quantum motives".
I'm not sure whether it makes sense to ask about the behavior of quantum cohomology under monodromy. As I understand it, monodromy refers to using a connection (Gauss-Manin connection) to parallel transport (co)homology classes. You can view quantum cohomology as being simply ordinary cohomology except with coefficients in a Novikov ring and with a deformed cup product. Viewed as such, the monodromy of quantum cohomology should be the same as the monodromy of ordinary cohomology, because "quantum cohomology classes" are no different from ordinary cohomology classes.