The trace only depends on values near the boundary. That is, if $\phi\in C^\infty([0,\infty))$ is one in a neighborhood of zero, then $\operatorname{tr}_\Omega(\phi u)=\operatorname{tr}_\Omega(u)$ for every $u\in H^1(\mathcal C)$. With this in mind, you can formally apply a cut-off to your constant function and treat the trace in that way. Traces do indeed make sense in $H^\epsilon(\mathcal C)$ since multiplication by a compactly supported function brings your function to $H^1(\mathcal C)$.
But this is not needed if you just want to show that the inclusion is strict. The point is that $H^\epsilon(\mathcal C)$ is a completion of $H^1(\mathcal C)$. When showing that constant functions are in the completion but not the original space, we should of course remember that they are not in the original space – if you permit the tautology. The norm $\|\cdot\|_{H^\epsilon(\mathcal C)}$ was only defined for functions in $H^1(\mathcal C)$ by the integral expression in the first place, so the expression $\|u_n-1\|_{H^\epsilon(\mathcal C)}$ (or $\|1\|_{H^\epsilon(\mathcal C)}$) indeed does not make sense for the norm defined on $H^1(\mathcal C)$. (Of course the norm can be naturally extended and the integral expression is exactly the same. You just need to extend the trace map to $\operatorname{tr}_\Omega:H^\epsilon(\mathcal C)\to L^2(\Omega)$ via cut-offs or otherwise to make sense of the expression.)
Once you have confirmed (as you seem to have) that your sequence is Cauchy in the norm, then it automatically has a limit in the completion. The sequence converges locally uniformly (in fact, it is eventually constant in any compact set), so it is easy to observe that if it had a limit in $H^1(\mathcal C)$, it would have to be the pointwise limit – the constant function. But the constant is not in $H^1(\mathcal C)$, so you have indeed shown that the completion contains a point outside the original space. This point is a point in a formal completion (an equivalence class of Cauchy sequences) but in this case it is natural to identify with a function (which is not in $H^1(\mathcal C)$).