What you observed resonates with the Von Staudt–Clausen theorem.
Indeed, by this theorem, the denominator of $(2k)\zeta(1-2k)=-B_{2k}$ equals $\prod_{p-1\mid 2k} p$. In particular, the numerator is odd, hence the denominator of $\zeta(1-2k)$ is divisible by $2\cdot 2\cdot 3=12$ for $k$ odd, and by $2\cdot 2\cdot 2\cdot 3\cdot 5=120$ for $k$ even.
Added. I misunderstood (misread) the question, and I thought the OP was only interested in the above divisibility relation. I certainly don't know how to prove that the denominator of $\zeta(1-2k)$ is infinitely often $12$ for $k$ odd and infinitely often $120$ for $k$ even. This seems andan interesting but difficult question.