An "order two sequence" is a sequence of morphisms such that the composition of any two consecutive morphisms is the zero morphism. At the point you are asking about in Waldhausen's paper, the condition is then $\kappa \circ \iota=0$ (which always holds by the definition of completed splitting diagram).
References:
[Barry Mitchell, Theory of Categories, Section 15]
[Marco Grandis, On the categorical foundation of homological and homotopical algebra, Section 1.2]