[EDIT: I should probably have explained why in the case of central isogenies there are no surprises. That is, if $f:G \rightarrow G'$ is a central isogeny between connected reductive $K$-groups for a field $K$ (i.e., the scheme-theoretic kernel $\ker f$ centralizes $G$ in the functorial sense) and if $T' \subset G'$ is a maximal $K$-torus then the scheme-theoretic preimage $T := f^{-1}(T')$ is a maximal $K$-torus of $G$ (in particular, smooth and connected, even if $f$ is inseparable or has disconnected kernel). The reason is that to prove the $K$-group scheme $T$ is a maximal $K$-torus it suffices to do so after a ground field extension, since by Grothendieck's theorem on the "geometric maximality" of maximal tori over the ground field in a smooth connected affine $K$-group we do not lose the maximality hypothesis on $T'$ after a ground field extension. Hence, we may assume $K$ is algebraically closed.
With $K = \overline{K}$, all choices of $T'$ are $G'(K)$-conjugate and the map $G(K) \rightarrow G'(K)$ is surjective, so it suffices to treat the case of a single $T'$. Ah, but then we simply choose a maximal $K$-torus $S$ in $G$, so $T' := f(S)$ is a maximal $K$-torus in $G' = f(G)$, and thus the problem is to show that the inclusion $S \subset f^{-1}(f(S))$ of $K$-group schemes is an equality. Since $f$ is necessarily faithfully flat, so $G' = G/(\ker f)$ as fppf group sheaves, it suffices to show that $\ker f \subset S$ as subfunctors of $G$. Since $\ker f$ is central in $G$ by hypothesis, so it centralizes $S$, and hence it suffices to show that the scheme-theoretic centralizer $Z_G(S)$ of $S$ is equal to $S$. We know equality on $K$-points by the classical theory, so one just has to show that the group scheme $Z_G(S)$ is smooth, which is to say that it has the "expected" tangent space (i.e., that of $S$). This is a problem on dual numbers, and is proved in section 9 of Chapter III of Borel's textbook in a more classical language.]