It seems that most of the usual anti-foundational set theories, when combined with the axiom of choice, imply that $|V|=|G|$. For example, in the case of Aczel's anti-foundation axiom AFA, we have
Theorem. ZFC-foundation + AFA proves $|V|=|G|$.
Proof. Since $V$ is contained in $G$, it suffices to find an injection of $G$ into $V$. Consider any set $x$, not necessarily well-founded. Let $y$ be the transitive closure of $\{x\}$, so $y$ has $x$ and all the hereditarily elements of $x$, and let $\langle y,{\in}\rangle$$\langle y,{\in},x\rangle$ be the corresponding accessible pointed graph, using the $\in$ relation. By AC, this graph has isomorphic copies $\langle h,\to\rangle$$\langle h,\to,a\rangle$ in $V$, since we may well-order the nodes and thus find an isomorphic copy built on ordinals. Let $F(x)$ be the collection of all such graphs isomorphic to $g$$\langle y,{\in},x\rangle$ chosen of $\in$-minimal rank in $V$. This is a set in $V$, and furthermore, $F$ is injective, since we can recover $y$ and hence $x$ from any graph isomorphic to $G=\langle y,{\in}\rangle$$\langle y,{\in},x\rangle$. So we have injections both ways $V\to G$ and $G\to V$, and so they are bijective. QED
The same argument works with many of the other anti-foundational set theories, provided that equality of sets is determined by properties of the underlying $\in$-graph on the hereditary closure of the set (an. One prominent exception: to this is that the Boffa AFA does not have this property).