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Given a cardinal number $|X|$, how many isomorphism classes of schemes with the cardinality of the set of points equal to $|X|$ are there?

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For any cardinal $\kappa\neq 0$, there is a proper class of schemes of cardinality $\kappa$ up to isomorphism. (In the case $\kappa = 0$, there is a unique empty scheme up to isomorphism, namely the spectrum of the zero ring.)

Note first that there is a proper class of schemes with just $1$ point. Indeed, there are fields of every infinite cardinality, and for any field $k$, $\text{Spec}(k)$ has only one point. This observation easily extends to the case when $\kappa$ is nonzero and finite, since for any field $k$, $\text{Spec}(k^n)$ has $n$ points.

In the case when $\kappa$ is infinite, we cannot handle arbitrary $\kappa$ with an infinite product of fields. For example, the points of $\text{Spec}(k^\mathbb{N})$ are in bijection with the ultrafilters on $\mathbb{N}$, so $|\text{Spec}(k^\mathbb{N})| = 2^{2^{\aleph_0}}$.

Instead, we can use the fact that $\kappa = \kappa+1$ when $\kappa$ is infinite. Fix an algebraically closed field $F$ of cardinality $\kappa$. For any field $k$, we have $|\text{Spec}(F[x]\times k)| = |\text{Spec}(F[x])\sqcup \text{Spec}(k)| = \kappa$, since $\text{Spec}(F[x])$ has one point for every element of $F$, together with a single generic point, and $\text{Spec}(k)$ has a single point. So again we have a proper class of schemes with underlying set of cardinality $\kappa$.

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    $\begingroup$ You could also just take the disjoint union of $\kappa$ copies of $\mathrm{Spec}\,k$ (of course your construction is nicer because it produces an affine scheme) $\endgroup$ Jun 18, 2019 at 14:05