ADDED: To address your original question more directly, the expression "well known" basically means here that the fact quoted is lurking in the 1976 Deligne-Lusztig paper, especially Sections 7-8. It's easier to look at the 1985 text by R.W. Carter Finite Groups of Lie Type, which separates the algebraic group treatment somewhat from the etale cohomology framework in DL. Here you should study Chapter 7, especially 7.5. Carter writes $R_{T,\theta}$ for the virtual character DL attach to an $F$-stable maximal torus $T=T_w$ and a complex character $\theta$ of the finite group $T^F$.

The main notational complication throughout is that you deal with connected reductive groups $H$ such as $G$ and $T$, writing $\varepsilon_H = (-1)^r$ with $r$ the "relative rank" (= $\mathbb{F}_q$-rank). Now Carter's 7.3.5 and 7.5.1 develop a basic DL result: for $\theta$ in "general position", $\varepsilon_G \varepsilon_T R_{T,\theta}$ is an irreducible character of $G^F$. The proof of 7.5.1 separately treats the case when $T=T_w$ fails to lie in any proper $F$-stable parabolic, while 7.5.2 shows in general that $(-1)^{\ell(w)} = \det w = \varepsilon_G \varepsilon_T$. By unpacking the notation you get the asserted parity, as in the special case of a Coxeter element mentioned above. If $G$ is actually semisimple and split, the tori in question are anisotropic (so $\varepsilon_T =1$) while $\det w = \varepsilon_G$.

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1) At the beginning it's important to specify that the Borel subgroup $B_0$ is $F$-stable. Lusztig (and others) try to deal simultaneously with split and quasisplit finite groups of Lie type such as $SL_n(\mathbb{F}_q)$ and $SU_n(\mathbb{F}_q)$ in the wider context of reductive groups such as $GL_n(\mathbb{F}_q)$ (and sometimes the groups of Suzuki and Ree are also included). In the split case, one is fixing a nice Borel subgroup such as the upper triangular matrices, along with a nice maximal torus such as the diagonal group, whereas other maximal tori defined over $\mathbb{F}_q$ need not be split and are determined by $F$-conjugacy classes in the Weyl group. In general one also has to distinguish the semisimple $\mathbb{F}_q$-rank, etc.
3) Closer to the question you raise, it's useful to compare Lusztig's 1976 paper on Coxeter tori and related characters. Twisting the given maximal torus by a Coxeter element provides an essential example (though not the only one in general) for the study of discrete series (= cuspidal) characters. These come from the twisted tori $T_w$ not contained in any proper $F$-stable parabolic. Note for instance that the length of a Coxeter element in the Weyl group relative to the fixed simple system (for a Borel subgroup) has the same parity as the semisimple rank of the group. Much of the motivation for the way characters of finite groups of Lie type are studied here goes back to this and other features of finite general linear groups, studied combinatorially by J.A. Green in his influential 1955 paper. But that case is only the tip of the iceberg in terms of theoretical complexity.