1- A very common mistake that 1st year students (but not even a single mathematician) think that it is true is "a transitive and symmetric relation on a set is reflexive". But as the empty set is a transitive and symmetric relation but not reflexive on any non-empty set. Of course there lots of non-trivial examples also.
2- Another common mistake is that the expression "countable union of countable sets is again countable" is independent of axiom of choice (AC). Many people make the proof of this statement without mentioning axiom of choice. Indeed, in his holly book Algebra, Lang proves this statement just by taking an ordering from each countable set and continues without the mentioning AC.