Edit number 2: the question without all the background
In response to Andrew's comments, here's the question I want to ask without all the infinite-dimensional preamble:
On $\mathbb R^d$ with its usual metric, pick a differential one-form $b$ and a smooth function $c$, and suppose that each has compact support. Consider the following (nondegenerate, nonlinear, second-order) differential equation for a path $\gamma(t)$:$$ \ddot \gamma = db \cdot \dot\gamma + dc $$This is the Euler-Lagrange equation, and so I will abbreviate it as (EL). In coordinates, it is:$$ \ddot \gamma^i = (\partial_i b_j - \partial_j b_i) \dot\gamma^j + \partial_i c $$Since (EL) is nondegenerate and $b,c$ have compact support, every solution to (EL) extends to have domain all of $\mathbb R$, and the solutions are in bijection with the tangent bundle ${\rm T}\mathbb R^d = \mathbb R^{2d}$ by identifying $\gamma$ with $(\dot\gamma(0),\gamma(0))$.
For each $(v,q) \in {\rm T}\mathbb R^d$, define a second-order linear differential operator $h_{(v,q)}$, given in coordinates by:$$ h_{(v,q)}[\eta]^j(t) = \ddot\eta^j(t) + \bigl(\partial_i b_j|_{\gamma(t)} - \partial_j b_i|_{\gamma(t)}\bigr) \dot\eta^i(t) + \bigl( \partial_i \partial_k b_j|_{\gamma(t)} \dot\gamma^k(t) - \partial_i\partial_j b_k|_{\gamma(t)} \dot\gamma^k(t) - \partial_i\partial_j c|_{\gamma(t)}\bigr) \eta^j(t) $$where $\gamma$ is the solution to (EL) with initial conditions $(\dot\gamma(0),\gamma(0)) = (v,q)$.
Let $C = {\rm T}\mathbb R^d \times \mathbb R_{>0}$. For $(v,q,T) \in C$, consider the operator $h_{(v,q)}$ as a map$$ h_{(v,q,T)} : \bigl\{ \eta: [0,T] \to \mathbb R^d \text{ s.t. } \eta(0) = 0 = \eta(T) \bigr\} \to \bigl\{ \eta: [0,T] \to \mathbb R^d \bigr\}$$Define $C' \subseteq C$ to be the set $\{ (v,q,T) \in C \text{ s.t. } \ker h_{(v,q,T)} = 0\}$.
Then I have the following questions:
Bonus question: I used the metric exactly once in (EL) and exactly once in (HJ), to compare the folks with raised indices to the ones with lowered indices. Does anything happen if I change the signature of the metric?
The rest is what I wrote before:

