It's at least possible to test whether the input is a permutation with a randomized algorithm that uses O(1) space, always answers "yes" when it is a permutation, and answers "yes" incorrectly when it is not a permutation only with very small probability.
Simply pick a hash function $h(x)$, compute $\sum_{i=1}^n h(i)$, compute $\sum_{i=1}^n h(a[i])$, and compare the two sums.
Ok, some care needs to be used in defining and choosing among an appropriate family of hash functions if you want a rigorous solution (and I suppose we do want one, since we're on mathoverflow not stackoverflow). Probably the simplest way is just to fill another array $H$ with random numbers and let $h(x)=H[x]$, but that is unacceptable because it uses too much space. I'll leave this part as unsolved and state this as a partial answer rather than claiming full rigor at this point.
See also my paper Space-Efficient Straggler Identification in Round-Trip Data Streams via Newton's Identitities and Invertible Bloom Filters which solves a more general problem (if there are O(1) duplicates, say which ones are duplicated, using only O(1) space) with the same lacuna in how the hash functions are defined. It also contains a proof that an algorithm that makes only a single pass over the data cannot solve the problem exactly and deterministically, but of course that doesn't apply to algorithms with random access to the input array.
