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This is somewhat of an expanded comment on Eoin's answer and his follow-up question of whether such sets correspond to hyperplanes in the discrete torus.

In the $C_2(n)$ case minimal blocking sets correspond to permutation of ${1...n}$ (consider a permutation matrix; then a minimal blocking set can be formed by choosing the points corresponding to the positions of the 1's in this matrix). Conversely, every minimal blocking set in the $d=2$ case arises this way, so for $n\geq 4$ not every blocking set corresponds to a hyperplane on a torus.

In the $d=3$ case this can be extended to see that every minimal blocking set corresponds to a set of $n$ permutations whose permutation matrix sums to the all 1's matrix (think of stacking the permutation matrices up to form our cube); again it is clear that not all such sets can correspond to hyperplanes if $n \geq 4$.

For $d \geq 4$, one can apply an analogous stacking approach using sets in $C_{d-1}$ to generate all minimal blocking sets although it is not immediately obvious to me how to relate these sets to permutations easily.

For $n = 2$, it is easy to see that both there are exactly two minimal blocking sets in any dimension and both always correspond to toric hyperplanes, and I think this is it seems that all minimal blocking sets are also always true toric hyperplanes for $n=3$ in any dimension due to how little room there is in $S_3$ to form such sets (this should follow from induction on the dimension; once one lays down the first $d-1$-dimensional layer and one point in the next layer, although this should determine where all the remaining points must go in the last two layers). If anyone can easily formalize this idea for the $n=3$ case (or provide a counterexample) I would love to see a proof or counterexample of thisit.

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This is somewhat of an expanded comment on Eoin's answer and his follow-up question of whether such sets correspond to hyperplanes in the discrete torus.

In the $C_2(n)$ case minimal blocking sets correspond to permutation of ${1...n}$ (consider a permutation matrix; then a minimal blocking set can be formed by choosing the points corresponding to the positions of the 1's in this matrix). Conversely, every minimal blocking set in the $d=2$ case arises this way, so for $n\geq 4$ not every blocking set corresponds to a hyperplane on a torus.

In the $d=3$ case this can be extended to see that every minimal blocking set corresponds to a set of $n$ permutations whose permutation matrix sums to the all 1's matrix (think of stacking the permutation matrices up to form our cube); again it is clear that not all such sets can correspond to hyperplanes if $n \geq 4$.

For $d \geq 4$, one can apply an analogous stacking approach using sets in $C_{d-1}$ to generate all minimal blocking sets although it is not immediately obvious to me how to relate these sets to permutations easily.

For $n = 2$, it is easy to see that both minimal blocking sets in any dimension always correspond to toric hyperplanes, and I think this is also always true for $n=3$ due to how little room there is in $S_3$ to form such sets, although I would love to see a proof or counterexample of this.