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Instead of iterating through all the possible numbers, is there a better way to find the greatest factor of a number $n$, such that it is less than $m$ ($m$ < $n$). Similarly how does one find the smallest factor of $n$ that is greater than $m$?

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This can be hard even if $n$ is squarefree with known but numerous prime factors, because it reduces to a knapsack problem (given items of size $c_i$, find $s$ large enough to approximate $\exp sc_i$ sufficiently well by primes $p_i$, and take $n = \prod_i \phantom. p_i$, etc.). – Noam D. Elkies Oct 28 2011 at 4:22

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Here's a way to find small factors. I think that finding large factors (up to the square root of $n$) is as hard as factoring in general.

Edit: Maybe the method in the paper I linked is not so great because it looks for small factors in a set of number. But it may cite more relevant papers.

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You can certainly use Pollard's Rho algorithm to probabalistically compute the greatest factor of $n$ smaller than $m$ in $O(min(n^\frac{1}{4}, m^\frac{1}{2}) polylog(n))$ time. Your other question is actually the same as the first. That is $k>m$ is a factor of $n$ iff $\frac{n}{k}$ is a factor of $n$ and smaller than $\frac{n}{m}$.

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