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Does anyone know any kind of graph software that could produce graphs like this for publication? Those links and crosses and numbers actually needs to be presented…. Thank you:)

One small update, those 0,1s will be replaced by pictures:)

enter image description here

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What do you mean by "produce"? Are you willing to lay this out by hand? If so, the LaTeX package xypic would be one workable solution. Or do you need a range of them, produced with some amount of automation? – James Cranch Aug 29 '14 at 16:51
Oh... Actually, what I mean by produce is simply that I could draw it out... I just need one such graph actually, thank you soo much. – user40780 Aug 29 '14 at 16:58
Scanning is your friend. – Igor Rivin Aug 29 '14 at 18:19
Do you mean I simply scan????:) – user40780 Aug 29 '14 at 18:24
This will take you essentially 0 time compared to the high-tech mentods. – Igor Rivin Aug 29 '14 at 20:05
up vote 5 down vote accepted

Tikz can do what you wish, if you don't mind writing LaTeX(-like) code to produce them. If you are familiar with LaTeX, it's worth your time to go through its learning curve in my opinion; it can access all of TeX's rendering capabilities natively and hence produce graphs that blend perfectly with the text style.

If you want a point-and-click graphic interface, I can suggest something like Inkscape or Dia.

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Mathematica has a TreePlot function, and a LayeredGraphPlot, and you can replace the nodes with whatever graphical object or picture you want (even other graphs if you like, which I have found useful).

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