If we consider algebra bundles over X where the fiber is an algebra of bounded operators in a separable Hilbert space H over the complex numbers. I learn from "Isomorphism Classification of Operator Algebra Bundles" (D. Husemoller) that we can use $H^{3}(X, Z)$ to classify these bundles if the fiber is $M_n(C)$, $B(H)$ or $K$(the algebra of compact operators). Now I want to know is there any result on how to classify the operator algebra bundles if the fiber is II$_1$ factor?

The answer to your question depends of course heavily on the topology that you use for the automorphism group of the $II_1$factor. A natural one to use is the socalled utopology: A net of automorphisms $\alpha_i \in Aut(M)$ converges to $\alpha \in Aut(M)$ in the utopology, iff $\lVert \varphi \circ \alpha_i  \varphi \circ \alpha \rVert \to 0$ for every element $\varphi \in M_{\ast}$, where $M_{\ast}$ denotes the predual of $M$. There is a paper by Popa with the title The Topological Structure of the Unitary and the Automorphism Groups of a Factor, where he proves for example that $Aut(M)$ is contractible for the hyperfinite type $II_1$factor. So, in this case you also obtain that $BAut(M)$ is at least weakly contractible. 

